After 4 days of trouble shooting the search errors in Nutrition Facts, the problem was a rather simple one. The problem was with the install. I have fixed the install and improved the search speed somewhat, but considering no one has been able to search, no one will appreciate the extra speed, oh well.
The new version (0.9.3.3) works and I tested it on every machine in a five mile radius of my house. You can jump to the download page or click here to download it.
Thanks to everyone that contacted with the problems they had with searching!